nf-core/motus/profile @ 0.0.0-3fc6d40
Summary
Taxonomic meta-omics profiling using universal marker genes
Get started
Add the following snippet to your workflow script to include this module.
include { MOTUS_PROFILE } from 'nf-core/motus/profile'
License
MIT License
Name
|
MOTUS_PROFILE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input fastq/fasta files of size 1 and 2 for single-end and paired-end data, respectively. Or the intermediate bam file mapped by bwa to the mOTUs database or the output bam file from motus profile. Or the intermediate mgc read counts table. *.{fastq,fq,fasta,fa,fastq.gz,fq.gz,fasta.gz,fa.gz,.bam,.mgc}
|
db
directory
|
mOTUs database downloaded by |
|---|
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Optional intermediate sorted BAM file from BWA *.{bam}
|
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Standard error logging file containing summary statistics *.log
|
mgc
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mgc
file
|
Optional intermediate mgc read count table file saved with *.{mgc}
|
out
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.out
file
|
Results with taxonomic classification of each read *.out
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| motus | Marker gene-based OTU (mOTU) profiling | https://motu-tool.org/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:22:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmotus%2Fprofile/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/motus/profile/blobs/sha256:9bf4263ebe62c6d9f7f433936cdf692a65efbec7f10c86d8acf2b0d2ffa7da59 |
| Size | 3.5 KB |
| Checksum | sha256:9bf4263ebe62c6d9f7f433936cdf692a65efbec7f10c86d8acf2b0d2ffa7da59 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:15 (UTC) | 1 | 3.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:22:59 (UTC) | 1 | 3.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:01 (UTC) | 1 | 3.4 KB |