nf-core/msisensorpro/scan @ 0.0.0-3fc6d40
Summary
MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input
Get started
Add the following snippet to your workflow script to include this module.
include { MSISENSORPRO_SCAN } from 'nf-core/msisensorpro/scan'
License
MIT License
Process
Name
|
MSISENSORPRO_SCAN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Reference genome *.{fasta}
|
Output
2 channels
#1
list
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.list
file
|
File containing microsatellite list *.{list}
|
#2
versions_msisensorpro
tuple
${task.process}
string
|
The name of the process |
|---|---|
msisensor-pro
string
|
The name of the tool |
msisensor-pro --version 2>&1 | sed -nE 's/Version:\s*//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| msisensorpro | Microsatellite Instability (MSI) detection using high-throughput sequencing data. | https://github.com/xjtu-omics/msisensor-pro |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:23:07 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmsisensorpro%2Fscan/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/msisensorpro/scan/blobs/sha256:6f8d558debf544b8a3a1b1ae1f85702823cec8d7fbcf14820f8e90f2d36996fc |
| Size | 2.3 KB |
| Checksum | sha256:6f8d558debf544b8a3a1b1ae1f85702823cec8d7fbcf14820f8e90f2d36996fc |
| Downloads | 5 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:23 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:07 (UTC) | 5 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:13 (UTC) | 3 | 2.3 KB |