Nextflow Registry | nf-core/multiqc@0.0.0-be790aa

nf-core/multiqc @ 0.0.0-be790aa

Aggregate results from bioinformatics analyses across many samples into a single report

Latest version: 0.0.0-be790aa

Total downloads: 11

Source: nf-core/modules

Authors: @abhi18av @bunop @drpatelh @jfy133

Maintainers: @abhi18av @bunop @drpatelh @jfy133

Aggregate results from bioinformatics analyses across many samples into a single report

Add the following snippet to your workflow script to include this module.

include { MULTIQC } from 'nf-core/multiqc'

MIT License

Process

`Name`	`MULTIQC`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`multiqc_files` file	List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
`multiqc_config` file	Optional config yml for MultiQC `*.{yml,yaml}`
`multiqc_logo` file	Optional logo file for MultiQC `*.{png}`
`replace_names` file	Optional two-column sample renaming file. First column a set of patterns, second column a set of corresponding replacements. Passed via MultiQC's `--replace-names` option. `*.{tsv}`
`sample_names` file	Optional TSV file with headers, passed to the MultiQC --sample_names argument. `*.{tsv}`

Output 4 channels

#1 data tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`*_data` directory	MultiQC data dir `multiqc_data`

#2 plots tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`*_plots` file	Plots created by MultiQC `*_plots`

#3 report tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`*.html` file	MultiQC report file `.html`

#4 versions tuple

`${task.process}` string	The process the versions were collected from
`multiqc` string	The tool name
`multiqc --version \| sed "s/.* //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
multiqc	MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.	https://multiqc.info/

Version	0.0.0-be790aa
Commit ID	be790aafaa178554b403f862164eb27042f0b35a
Release Date	24 Apr 2026 15:00:59 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmultiqc/0.0.0-be790aa/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/multiqc/blobs/sha256:1cd7c4919478638f3404af98f61c25000e6a601e71ce905794c77424a19cab14
Size	11.5 KB
Checksum	sha256:1cd7c4919478638f3404af98f61c25000e6a601e71ce905794c77424a19cab14
Downloads	4

Version	Date	Downloads	Size
0.0.0-be790aa	24 Apr 2026 15:00:59 (UTC)	4	11.5 KB
0.0.0-6c4ed3a	23 Apr 2026 15:32:30 (UTC)	3	33.6 KB