nf-core/muse/call @ 0.0.0-0c7146d
Summary
pre-filtering and calculating position-specific summary statistics using the Markov substitution model
Get started
Add the following snippet to your workflow script to include this module.
include { MUSE_CALL } from 'nf-core/muse/call'
License
MIT License
Process
Name
|
MUSE_CALL |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tumor_bam
file
|
Sorted tumor BAM file *.bam
|
tumor_bai
file
|
Index file for the tumor BAM file *.bai
|
normal_bam
file
|
Sorted matched normal BAM file *.bam
|
normal_bai
file
|
Index file for the normal BAM file *.bai
|
reference
file
|
reference genome file .fasta
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.MuSE.txt
file
|
position-specific summary statistics *.MuSE.txt
|
#2
versions_muse
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
muse
string
|
The tool name |
MuSE --version | sed -e 's/MuSE, version //g' | sed -e 's/MuSE v//g'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| MuSE | Somatic point mutation caller based on Markov substitution model for molecular evolution | https://bioinformatics.mdanderson.org/public-software/muse/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:20:34 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmuse%2Fcall/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/muse/call/blobs/sha256:f5a5232761085a29843fd843baefa64fc067c067075b11cfe9bbb4a7b5b9f34e |
| Size | 4.2 KB |
| Checksum | sha256:f5a5232761085a29843fd843baefa64fc067c067075b11cfe9bbb4a7b5b9f34e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:38 (UTC) | 3 | 4.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:34 (UTC) | 3 | 4.2 KB |