nf-core/nextclade/datasetget @ 0.0.0-6c4ed3a
Summary
Get dataset for SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (C++ implementation)
Get started
Add the following snippet to your workflow script to include this module.
include { NEXTCLADE_DATASETGET } from 'nf-core/nextclade/datasetget'
License
MIT License
Process
Name
|
NEXTCLADE_DATASETGET |
|---|
Input
2 channels
dataset
string
|
Name of dataset to retrieve. A list of available datasets can be obtained using the nextclade dataset list command. .+
|
|---|
tag
string
|
Version tag of the dataset to download. A list of available datasets can be obtained using the nextclade dataset list command. .+
|
|---|
Output
2 channels
#1
dataset
$prefix
directory
|
Directory containing the dataset |
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| nextclade | SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks | https://github.com/nextstrain/nextclade |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:32:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fnextclade%2Fdatasetget/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/nextclade/datasetget/blobs/sha256:efd3cba8c30975b843f64873518cc8eb0752895141a8cac0fbb4c207bdfa4c72 |
| Size | 2.6 KB |
| Checksum | sha256:efd3cba8c30975b843f64873518cc8eb0752895141a8cac0fbb4c207bdfa4c72 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:59 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:21:08 (UTC) | 3 | 2.6 KB |