nf-core/nucmer @ 0.0.0-6c4ed3a
Summary
NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
Get started
Add the following snippet to your workflow script to include this module.
include { NUCMER } from 'nf-core/nucmer'
License
MIT License
Process
Name
|
NUCMER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
ref
file
|
FASTA file of the reference sequence *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
query
file
|
FASTA file of the query sequence *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
3 channels
#1
delta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.delta
file
|
File containing coordinates of matches between reference and query |
#2
coords
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.coords
file
|
NUCmer1.1 coords output file *.{coords}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| nucmer | NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences. | http://mummer.sourceforge.net/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:33:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fnucmer/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/nucmer/blobs/sha256:a109e02d2736f87d072f870faec857a0bd34fa50de7811996874b6b826c8b997 |
| Size | 3.1 KB |
| Checksum | sha256:a109e02d2736f87d072f870faec857a0bd34fa50de7811996874b6b826c8b997 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:33:20 (UTC) | 4 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:44 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:21:41 (UTC) | 3 | 3.1 KB |