Nextflow Modules
Showing module(s) with keyword "align"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/ampcombi | Process | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir DRAMP | A tool to parse and summarise results from antimicrobial peptides tools and present functional classification. |
| nf-core/ampcombi2/cluster | Process | antimicrobial peptides amps parsing reporting align clustering mmseqs2 | A submodule that clusters the merged AMP hits generated from ampcombi2/parsetables and ampcombi2/complete using MMseqs2 cluster. |
| nf-core/ampcombi2/complete | Process | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP | A submodule that merges all output summary tables from ampcombi/parsetables in one summary file. |
| nf-core/ampcombi2/parsetables | Process | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP MMseqs2 InterProScan | A submodule that parses and standardizes the results from various antimicrobial peptide identification tools. |
| nf-core/bamaligncleaner | Process | bam clean align | removes unused references from header of sorted BAM/CRAM files. |
| nf-core/bbmap/align | Process | align map fasta fastq genome reference | Align short or PacBio reads to a reference genome using BBMap |
| nf-core/bbmap/bbsplit | Process | align map fastq genome reference | Split sequencing reads by mapping them to multiple references simultaneously |
| nf-core/bowtie2/align | Process | align map fasta fastq genome reference | Align reads to a reference genome using bowtie2 |
| nf-core/bowtie/align | Process | align map fastq fasta genome reference | Align reads to a reference genome using bowtie |
| nf-core/bwa/aln | Process | bwa aln short-read align reference fasta map fastq | Find SA coordinates of the input reads for bwa short-read mapping |
| nf-core/bwa/sampe | Process | bwa aln short-read align reference fasta map sam bam | Convert paired-end bwa SA coordinate files to SAM format |
| nf-core/bwa/samse | Process | bwa aln short-read align reference fasta map sam bam | Convert bwa SA coordinate file to SAM format |
| nf-core/cellrangerarc/count | Process | align count reference | Modu |