Nextflow Registry | nf-core/openms/filefilter@0.0.0-3fc6d40

nf-core/openms/filefilter @ 0.0.0-3fc6d40

Filters peptide/protein identification results by different criteria.

filter mzML openms proteomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @jonasscheid

Maintainers: @jonasscheid

Filters peptide/protein identification results by different criteria.

Add the following snippet to your workflow script to include this module.

include { OPENMS_FILEFILTER } from 'nf-core/openms/filefilter'

MIT License

Process

`Name`	`OPENMS_FILEFILTER`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`file` file	Peptide-spectrum matches. `*.{mzML,featureXML,consensusXML}`

Output 4 channels

#1 mzml tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.mzML` file	Filtered mzML file. `*.mzML`

#2 featurexml tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.featureXML` file	Filtered featureXML file. `*.featureXML`

#3 consensusxml tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.consensusXML` file	Filtered consensusXML file. `*.consensusXML`

#4 versions_openms tuple

`${task.process}` string	The name of the process
`openms` string	The name of the tool
`FileInfo --help 2>&1 \| sed -nE 's/^Version: ([0-9.]+).*/\1/p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
openms	OpenMS is an open-source software C++ library for LC-MS data management and analyses	https://openms.de

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:24:02 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fopenms%2Ffilefilter/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/openms/filefilter/blobs/sha256:17fab9901169b8b2686e37951317231f8fae846997dac20cd8b28b1686e2df1b
Size	3.2 KB
Checksum	sha256:17fab9901169b8b2686e37951317231f8fae846997dac20cd8b28b1686e2df1b
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:33:39 (UTC)	3	3.2 KB
0.0.0-3fc6d40	22 Apr 2026 15:24:02 (UTC)	3	3.2 KB
0.0.0-0c7146d	08 Apr 2026 19:22:08 (UTC)	3	3.2 KB