Nextflow Modules
Showing module(s) with keyword "openms"
| Module | Keywords | Description |
|---|---|---|
| nf-core/openms/decoydatabase | decoy database openms proteomics fasta | Create a decoy peptide database from a standard FASTA database. |
| nf-core/openms/filefilter | filter mzML openms proteomics | Filters peptide/protein identification results by different criteria. |
| nf-core/openms/idfilter | filter idXML openms proteomics | Filters peptide/protein identification results by different criteria. |
| nf-core/openms/idmassaccuracy | mass_error openms proteomics | Calculates a distribution of the mass error from given mass spectra and IDs. |
| nf-core/openms/idmerger | merge idXML openms proteomics | Merges several idXML files into one idXML file. |
| nf-core/openms/idripper | split idXML openms proteomics | Split a merged identification file into their originating identification files |
| nf-core/openms/idscoreswitcher | switch score idXML openms proteomics | Switches between different scores of peptide or protein hits in identification data |
| nf-core/openms/peakpickerhires | peak picking mzml openms proteomics | A tool for peak detection in high-resolution profile data (Orbitrap or FTICR) |
| nf-core/openms/peptideindexer | refresh idXML openms proteomics | Refreshes the protein references for all peptide hits. |
| nf-core/openms/psmfeatureextractor | features idXML openms percolator proteomics psm | Computes extra features for each input PSM for use with Percolator rescoring. |
| nf-core/openms/textexporter | export openms proteomics text tsv | Exports various OpenMS XML formats (featureXML, consensusXML, idXML, mzML) to a human-readable text format. |
| nf-core/openmsthirdparty/cometadapter | search engine fasta mzml openms proteomics | Annotates MS/MS spectra using Comet. |