nf-core/openms/peptideindexer @ 0.0.0-0c7146d
Summary
Refreshes the protein references for all peptide hits.
Get started
Add the following snippet to your workflow script to include this module.
include { OPENMS_PEPTIDEINDEXER } from 'nf-core/openms/peptideindexer'
License
MIT License
Process
Name
|
OPENMS_PEPTIDEINDEXER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
idxml
file
|
idXML identification file *.idXML
|
fasta
file
|
Input sequence database in FASTA format *.fasta
|
Output
2 channels
#1
indexed_idxml
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.idXML
file
|
Refreshed idXML identification file *.idXML
|
#2
versions_openms
tuple
${task.process}
string
|
The name of the process |
|---|---|
openms
string
|
The name of the tool |
FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| openms | OpenMS is an open-source software C++ library for LC-MS data management and analyses | https://openms.de |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:22:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fopenms%2Fpeptideindexer/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/openms/peptideindexer/blobs/sha256:067763ced2f88bfe60d33637736a034e1613eda7171ded6f4ef33e3cb0c5a90f |
| Size | 2.5 KB |
| Checksum | sha256:067763ced2f88bfe60d33637736a034e1613eda7171ded6f4ef33e3cb0c5a90f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:33:48 (UTC) | 2 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:11 (UTC) | 1 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:21 (UTC) | 1 | 2.5 KB |