nf-core/openms/psmfeatureextractor @ 0.0.0-0c7146d
Summary
Computes extra features for each input PSM for use with Percolator rescoring.
Get started
Add the following snippet to your workflow script to include this module.
include { OPENMS_PSMFEATUREEXTRACTOR } from 'nf-core/openms/psmfeatureextractor'
License
MIT License
Process
Name
|
OPENMS_PSMFEATUREEXTRACTOR |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
id_file
file
|
Peptide identification file from a search engine. *.{idXML,mzid}
|
Output
2 channels
#1
idxml
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.idXML
file
|
Peptide identification file with extra PSM features added. *.idXML
|
#2
versions_openms
tuple
${task.process}
string
|
The name of the process |
|---|---|
openms
string
|
The name of the tool |
FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| openms | OpenMS is an open-source software C++ library for LC-MS data management and analyses | https://openms.de |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:22:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fopenms%2Fpsmfeatureextractor/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/openms/psmfeatureextractor/blobs/sha256:bcb40b88aa80d4e7321e433a615e960d70a5e6179ded1fb68a80faa21981b539 |
| Size | 3.0 KB |
| Checksum | sha256:bcb40b88aa80d4e7321e433a615e960d70a5e6179ded1fb68a80faa21981b539 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:33:49 (UTC) | 3 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:12 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:22 (UTC) | 3 | 3.0 KB |