nf-core/orthofinder @ 0.0.0-6c4ed3a
Summary
OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics.
Get started
Add the following snippet to your workflow script to include this module.
include { ORTHOFINDER } from 'nf-core/orthofinder'
License
MIT License
Process
Name
|
ORTHOFINDER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastas
list
|
Input fasta files *.{fa,faa,fasta,fas,pep}
|
#2
tuple
meta2
map
|
Groovy Map containing a name e.g. |
|---|---|
prior_run
directory
|
A folder containing a previous WorkingDirectory from OrthoFinder. |
Output
3 channels
#1
working
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
$prefix/WorkingDirectory
directory
|
OrthoFinder WorkingDirectory (used for the resume function) |
#2
orthofinder
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
$prefix
directory
|
OrthoFinder output directory |
#3
versions_orthofinder
tuple
${task.process}
string
|
The name of the process |
|---|---|
orthofinder
string
|
The name of the tool |
NO_COLOR=1 orthofinder --version | cut -d 'v' -f2 | perl -pe 's/\e\[[0-9;]*m//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| orthofinder | Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy! | https://github.com/davidemms/OrthoFinder |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:34:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Forthofinder/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/orthofinder/blobs/sha256:b490a01c57fe6a6d01191803fe3c7239dbe01ecc9072b39ea6cbf9520cda9232 |
| Size | 3.3 KB |
| Checksum | sha256:b490a01c57fe6a6d01191803fe3c7239dbe01ecc9072b39ea6cbf9520cda9232 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:34:43 (UTC) | 4 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:53 (UTC) | 4 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:37 (UTC) | 3 | 3.3 KB |