Nextflow Registry | nf-core/parabricks/indexgvcf@0.0.0-0c7146d

nf-core/parabricks/indexgvcf @ 0.0.0-0c7146d

NVIDIA Clara Parabricks GPU-accelerated gvcf indexing tool.

vcf gvcf tbi idx index GPU-accelerated

Latest version: 0.0.0-0c7146d

Total downloads: 3

Source: nf-core/modules

Authors: @Furentsu @bsiranosian

Maintainers: @famosab

NVIDIA Clara Parabricks GPU-accelerated gvcf indexing tool.

Add the following snippet to your workflow script to include this module.

include { PARABRICKS_INDEXGVCF } from 'nf-core/parabricks/indexgvcf'

MIT License

Process

`Name`	`PARABRICKS_INDEXGVCF`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing gvcf information
`gvcf` file	gvcf file to be indexed `*.{vcf,vcf.gz}`

Output 3 channels

#1 gvcf_index tuple

`meta` map	Groovy Map containing output information
`*.{idx,tbi}` file	Index of the gvcf file `*.{idx,tbi}`

#2 compatible_versions

`compatible_versions.yml` file	File containing info on compatible CPU-based software versions. `compatible_versions.yml`

#3 versions_parabricks tuple

`${task.process}` string	The process the versions were collected from
`parabricks` string	The tool name
`pbrun version \| grep -m1 '^pbrun:' \| sed 's/^pbrun:[[:space:]]*//'` string	The command used to generate the version of the tool

Tool	Description	Homepage
parabricks	NVIDIA Clara Parabricks GPU-accelerated genomics tools	https://www.nvidia.com/en-us/clara/genomics/

Version	0.0.0-0c7146d
Commit ID	0c7146d85582628b5d1034504702fa808632b1af
Release Date	08 Apr 2026 19:24:08 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fparabricks%2Findexgvcf/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/parabricks/indexgvcf/blobs/sha256:e11d4bc7f203d49456ee64ff281bee20327a162ee08bb7a8ed43a61a3ffa3883
Size	2.9 KB
Checksum	sha256:e11d4bc7f203d49456ee64ff281bee20327a162ee08bb7a8ed43a61a3ffa3883
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-0c7146d	08 Apr 2026 19:24:08 (UTC)		3	2.9 KB