nf-core/paraphrase @ 0.0.0-0c7146d
Summary
Parse and annotate paraphrase JSONs
Get started
Add the following snippet to your workflow script to include this module.
include { PARAPHRASE } from 'nf-core/paraphrase'
License
MIT License
Process
Name
|
PARAPHRASE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
jsons
file
|
One or more JSON files from paraphase *.json
|
samples
list
|
Sample names corresponding to the JSON files. Must be in the same order as the JSON files. |
#2
tuple
meta2
map
|
Groovy Map containing reference information. |
|---|---|
yaml
file
|
YAML file containing rules for annotation *.yaml
|
tsv_output
boolean
|
Whether to output in TSV format instead of JSON. Default is false (JSON output). |
|---|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
*.tsv
file
|
Annotated output in TSV format *.tsv
|
#2
json
tuple
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
*.json
file
|
Annotated output in JSON format *.json
|
#3
versions_paraphrase
tuple
${task.process}
string
|
The name of the process |
|---|---|
paraphrase
string
|
The name of the tool |
paraphrase --version | sed 's/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| paraphrase | Paraphase JSON parser | https://github.com/Clinical-Genomics/paraphrase |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:24:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fparaphrase/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/paraphrase/blobs/sha256:afd24ea807647615b21be7b5475de617aec6c12e7f473fb3f5bd16ddeafe3706 |
| Size | 3.1 KB |
| Checksum | sha256:afd24ea807647615b21be7b5475de617aec6c12e7f473fb3f5bd16ddeafe3706 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:12 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:24:26 (UTC) | 4 | 3.1 KB |