Nextflow Registry | nf-core/pbmm2/align@0.0.0-0c7146d

nf-core/pbmm2/align @ 0.0.0-0c7146d

Alignment with PacBio's minimap2 frontend

align pacbio genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @tanyasarkjain

Maintainers: @tanyasarkjain

Alignment with PacBio's minimap2 frontend

Add the following snippet to your workflow script to include this module.

include { PBMM2_ALIGN } from 'nf-core/pbmm2/align'

MIT License

Process

`Name`	`PBMM2_ALIGN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`bam` file	Sorted BAM/CRAM/SAM file `*.{bam,cram,sam}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fasta` file	fasta file to align bam to `*.{fasta}`

Output 2 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.bam` file	Sorted BAM/CRAM/SAM file `*.{bam,cram,sam}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
pbmm2	A minimap2 frontend for PacBio native data formats	https://github.com/PacificBiosciences/pbmm2

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:24:38 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpbmm2%2Falign/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pbmm2/align/blobs/sha256:fe5638240005e5c89404260b3501915191831113900cbade987e5e96de0b7100
Size	2.2 KB
Checksum	sha256:fe5638240005e5c89404260b3501915191831113900cbade987e5e96de0b7100
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:35:21 (UTC)	4	2.2 KB
0.0.0-3fc6d40	22 Apr 2026 15:25:26 (UTC)	3	2.2 KB
0.0.0-0c7146d	08 Apr 2026 19:24:38 (UTC)	3	2.2 KB