nf-core/pbtk/pbindex @ 0.0.0-6c4ed3a
Summary
Minimalistic tool which creates an index file that enables random access into PacBio BAM files
Get started
Add the following snippet to your workflow script to include this module.
include { PBTK_PBINDEX } from 'nf-core/pbtk/pbindex'
License
MIT License
Process
Name
|
PBTK_PBINDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Input BAM file *.bam
|
Output
2 channels
#1
pbi
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.pbi
file
|
Index file *.bam.pbi
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pbtk | pbtk - PacBio BAM toolkit | https://github.com/PacificBiosciences/pbtk |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:35:27 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpbtk%2Fpbindex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pbtk/pbindex/blobs/sha256:53757acaa2c7d5c291df56193bdd76116c6fd95b740b637147657c6df4b408bd |
| Size | 2.1 KB |
| Checksum | sha256:53757acaa2c7d5c291df56193bdd76116c6fd95b740b637147657c6df4b408bd |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:27 (UTC) | 4 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:25:29 (UTC) | 3 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:24:47 (UTC) | 3 | 2.1 KB |