Nextflow Registry | nf-core/platypus@0.0.0-6c4ed3a

nf-core/platypus @ 0.0.0-6c4ed3a

Platypus is a tool that efficiently and accurately calling genetic variants from next-generation DNA sequencing data

variant call dna genetic

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @kubranarci

Maintainers: @kubranarci

Platypus is a tool that efficiently and accurately calling genetic variants from next-generation DNA sequencing data

Add the following snippet to your workflow script to include this module.

include { PLATYPUS } from 'nf-core/platypus'

MIT License

Process

`Name`	`PLATYPUS`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`tumor_file` file	Tumor or metastatic sample, BAM or CRAM file `*.{bam,cram}`
`tumor_file_bai` file	Index of BAM file `*.{bai,crai}`
`control_file` file	Control (or blood) of matching tumor/metastatic sample, BAM or CRAM file `*.{bam,cram}`
`control_file_bai` file	Index of BAMfile `*.{bai,crai}`

`fasta` file	The reference fasta file `*.fa`

`fai` file	Index of reference fasta file `*.fai`

`skipregions_file` file	File with regions to skip, region as comma-separated list of chr:start-end, or just list of chr, or nothing `.bed\|.txt\|*.tab`

Output 4 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`*.log` file	Log file `*.log`

#2 tbi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`*.vcf.gz.tbi` file	Index of VCF file `*.vcf.gz.tbi`

#3 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`*.vcf.gz` file	Output VCF file `*.vcf.gz`

#4 version

`versions.yml` file	File containing software version `*.{version.txt}`

Tool	Description	Homepage
platypus	Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data.	https://www.well.ox.ac.uk/research/research-groups/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:37:38 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fplatypus/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/platypus/blobs/sha256:e18162fa56e6feff3caaebc8ae36ae6b9a8973e9373e9960e6fc71e515411ac6
Size	3.3 KB
Checksum	sha256:e18162fa56e6feff3caaebc8ae36ae6b9a8973e9373e9960e6fc71e515411ac6
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:37:38 (UTC)	3	3.3 KB
0.0.0-3fc6d40	22 Apr 2026 15:26:45 (UTC)	3	3.3 KB
0.0.0-0c7146d	08 Apr 2026 19:26:32 (UTC)	3	3.3