nf-core/plink/genome @ 0.0.0-6c4ed3a
Summary
Calculates identity-by-descent over autosomal SNPs
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK_GENOME } from 'nf-core/plink/genome'
License
MIT License
Process
Name
|
PLINK_GENOME |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
PLINK binary genotype table file *.{bed}
|
bim
file
|
PLINK extended MAP file *.{bim}
|
fam
file
|
PLINK sample information file *.{fam}
|
Output
2 channels
#1
genome
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.genome
file
|
IBD report *.{genome}
|
#2
versions_plink
tuple
${task.process}
string
|
The name of the process |
|---|---|
plink
string
|
The name of the tool |
plink --version 2>&1 | sed 's/^PLINK v//;s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| plink | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. | https://www.cog-genomics.org/plink |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:37:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fplink%2Fgenome/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plink/genome/blobs/sha256:a4b09e4fd89e708f76ea08f183c049048970aef195fe0cea9dc9045265279491 |
| Size | 2.3 KB |
| Checksum | sha256:a4b09e4fd89e708f76ea08f183c049048970aef195fe0cea9dc9045265279491 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:37:45 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:26:52 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:26:43 (UTC) | 3 | 2.3 KB |