nf-core/plink2/het @ 0.0.0-0c7146d
Summary
Calculate Inbreeding data with plink2
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK2_HET } from 'nf-core/plink2/het'
License
MIT License
Process
Name
|
PLINK2_HET |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
plink_genotype_file
file
|
PLINK binary genotype table file or PLINK 2 binary genotype table file *.{bed,pgen}
|
plink_variant_file
file
|
PLINK extended MAP file or PLINK 2 variant information file *.{bim,pvar}
|
plink_sample_file
file
|
PLINK sample information file or PLINK 2 sample information file *.{fam,psam}
|
Output
2 channels
#1
het
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.het
file
|
observed and expected homozygous/heterozygous genotype counts for each sample and method-of-moments F coefficient estimates *.het
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| plink2 | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner | http://www.cog-genomics.org/plink/2.0/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:27:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fplink2%2Fhet/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plink2/het/blobs/sha256:cf7dac62fe7665a739b8b2b3ef6e11e82c64d3bd4d7fedf6918bbe3e505e0415 |
| Size | 2.5 KB |
| Checksum | sha256:cf7dac62fe7665a739b8b2b3ef6e11e82c64d3bd4d7fedf6918bbe3e505e0415 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:37:57 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:05 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:27:42 (UTC) | 3 | 2.5 KB |