nf-core/plink2/vcf @ 0.0.0-0c7146d
Summary
Import variant genetic data using plink2
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK2_VCF } from 'nf-core/plink2/vcf'
License
MIT License
Process
Name
|
PLINK2_VCF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
Variant calling file (vcf) *.{vcf}, *.{vcf.gz}
|
Output
5 channels
#1
pgen
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pgen
file
|
PLINK 2 binary genotype table *.{pgen}
|
#2
psam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.psam
file
|
PLINK 2 sample information file *.{psam}
|
#3
pvar
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pvar
file
|
PLINK 2 variant information file *.{pvar.zst}
|
#4
pvar_zst
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pvar.zst
file
|
PLINK 2 variant information zst file *.pvar.zst
|
#5
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| plink2 | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner | http://www.cog-genomics.org/plink/2.0/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:27:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fplink2%2Fvcf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plink2/vcf/blobs/sha256:a7a1f2016c7c9683ad7da9ff93fc8da44d49a4cce326639c5b8a10d233d85d3d |
| Size | 2.5 KB |
| Checksum | sha256:a7a1f2016c7c9683ad7da9ff93fc8da44d49a4cce326639c5b8a10d233d85d3d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:03 (UTC) | 1 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:11 (UTC) | 1 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:27:51 (UTC) | 1 | 2.5 KB |