nf-core/preseq/lcextrap @ 0.0.0-3fc6d40
Summary
Software for predicting library complexity and genome coverage in high-throughput sequencing
Get started
Add the following snippet to your workflow script to include this module.
include { PRESEQ_LCEXTRAP } from 'nf-core/preseq/lcextrap'
License
MIT License
Process
Name
|
PRESEQ_LCEXTRAP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Log file containing stderr produced by Preseq *.{log}
|
#2
lc_extrap
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.lc_extrap.txt
file
|
File containing output of Preseq lcextrap *.{lc_extrap.txt}
|
#3
versions_preseq
tuple
${task.process}
string
|
The name of the process |
|---|---|
preseq
string
|
The name of the tool |
preseq 2>&1 | sed -n 's/.*Version: \(.*\)/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| preseq | Software for predicting library complexity and genome coverage in high-throughput sequencing | http://smithlabresearch.org/software/preseq/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:27:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpreseq%2Flcextrap/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/preseq/lcextrap/blobs/sha256:16f3cc6a118ffcd3866257141a81013b4094154423f573efbe79b3f06d1a2ce7 |
| Size | 2.7 KB |
| Checksum | sha256:16f3cc6a118ffcd3866257141a81013b4094154423f573efbe79b3f06d1a2ce7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:22 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:28 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:28:17 (UTC) | 4 | 2.6 KB |