Nextflow Modules
Showing module(s) with keyword "complexity"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fastq_shortreads_preprocess_qc | Workflow | fastq illumina short reads qc stats preprocessing barcoding adapters merge complexity deduplication host decontamination | Quality check and preprocessing subworkflow of Illumina short reads that can do: quality check of input reads and generate statistics, preprocess and validate reads, barcode removal, remove adapters and merge reads, filter by sequence complexity, deduplicate reads, remove host contamination, concatenate reads and generate statistics for post-processing reads. WARNING: requires at least the process configurations from the nextflow.config to be added to the modules.config in the pipeline in order to work as intended. |
| nf-core/nonpareil/curve | Process | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file |
| nf-core/nonpareil/nonpareil | Process | metagenomics statistics coverage redundancy diversity complexity | Calculate metagenome redundancy curve from FASTQ files |
| nf-core/nonpareil/nonpareilcurvesr | Process | metagenomics statistics coverage redundancy diversity complexity multiqc | Generate summary reports with raw data for Nonpareil NPO curves, including MultiQC compatible JSON/TSV files |
| nf-core/nonpareil/set | Process | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curves in PNG format from multiple Nonpareil npo files in a single image |
| nf-core/preseq/ccurve | Process | preseq library complexity | Software for predicting library complexity and genome coverage in high-throughput sequencing |
| nf-core/preseq/lcextrap | Process | preseq library complexity | Software for predicting library complexity and genome coverage in high-throughput sequencing |