nf-core/pridepy/fetchsdrf @ 0.0.0-4c44634
Summary
Fetch an SDRF file from the PRIDE Archive for a given project accession.
Get started
Add the following snippet to your workflow script to include this module.
include { PRIDEPY_FETCHSDRF } from 'nf-core/pridepy/fetchsdrf'
License
MIT License
Process
Name
|
PRIDEPY_FETCHSDRF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
pride_id
string
|
PRIDE Archive project accession (e.g. PXD004684) |
Output
2 channels
#1
sdrf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.sdrf.tsv
file
|
SDRF (Sample and Data Relationship Format) file describing the experimental design of the PRIDE project *.sdrf.tsv
|
#2
versions_pridepy
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
pridepy
string
|
The tool name |
python -c "from importlib.metadata import version; print(version('pridepy'))"
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| pridepy | Python client library to access PRIDE Archive data programmatically, including downloading files and metadata for public proteomics datasets. | https://github.com/PRIDE-Archive/pridepy |
| Version | 0.0.0-4c44634 |
|---|---|
| Commit ID | 4c44634073c8b785e34735a3bd1b3c89123bc34b |
| Release Date | 08 May 2026 15:00:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpridepy%2Ffetchsdrf/0.0.0-4c44634/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pridepy/fetchsdrf/blobs/sha256:7e821790634c44c9ac7b3f5ee53bf876169629e66b81e9135b39ec1707aaaa66 |
| Size | 2.4 KB |
| Checksum | sha256:7e821790634c44c9ac7b3f5ee53bf876169629e66b81e9135b39ec1707aaaa66 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-4c44634 | 08 May 2026 15:00:50 (UTC) | 1 | 2.4 KB | - |