Nextflow Modules
Showing module(s) with keyword "sdrf"
| Module | Keywords | Description |
|---|---|---|
| nf-core/parsesdrf/convert | sdrf sdrf-pipelines samplesheet proteomics immunopeptidomics mhcquant openms maxquant msstats normalyzerde diann metadata | Convert an SDRF (Sample and Data Relationship Format) file into a pipeline-specific samplesheet/configuration using the `parse_sdrf convert-<format>` subcommands of the sdrf-pipelines package. The chosen `format` selects the subcommand; the module owns the output filenames and emits one tuple per supported format (mhcquant, openms, maxquant, msstats, normalyzerde, diann). |
| nf-core/pridepy/fetchsdrf | pride sdrf proteomics download metadata | Fetch an SDRF file from the PRIDE Archive for a given project accession. |