nf-core/pypgx/computecontrolstatistics @ 0.0.0-0c7146d
Summary
Compute summary statistics for control gene from BAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { PYPGX_COMPUTECONTROLSTATISTICS } from 'nf-core/pypgx/computecontrolstatistics'
License
MIT License
Process
Name
|
PYPGX_COMPUTECONTROLSTATISTICS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM file *.{bam}
|
bai
file
|
BAM index file *.{bai}
|
control_gene
string
|
Gene to use as control gene {VDR,EGFR,RYR1}
|
|---|
Output
2 channels
#1
control_stats
tuple
meta
map
|
Groovy Map containing sample information e.g. *.{zip}
|
|---|---|
*.zip
map
|
Groovy Map containing sample information e.g. *.{zip}
|
#2
versions_pypgx
tuple
${task.process}
string
|
The name of the process |
|---|---|
pypgx
string
|
The name of the tool |
pypgx -v 2>&1 | grep -oE "[0-9]+\.[0-9]+\.[0-9]+" | head -1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| pypgx | A Python package for pharmacogenomics research | https://pypgx.readthedocs.io/en/latest/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:29:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpypgx%2Fcomputecontrolstatistics/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pypgx/computecontrolstatistics/blobs/sha256:aeab70d38ed68c3479c56c1fc0894f0c669196f27b473804d9dc113a07481c16 |
| Size | 2.7 KB |
| Checksum | sha256:aeab70d38ed68c3479c56c1fc0894f0c669196f27b473804d9dc113a07481c16 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:39:07 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:57 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:28 (UTC) | 2 | 2.7 KB |