nf-core/pyrodigal @ 0.0.0-6c4ed3a
Summary
Pyrodigal is a Python module that provides bindings to Prodigal, a fast, reliable protein-coding gene prediction for prokaryotic genomes.
Get started
Add the following snippet to your workflow script to include this module.
include { PYRODIGAL } from 'nf-core/pyrodigal'
License
MIT License
Name
|
PYRODIGAL |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file *.{fasta.gz,fa.gz,fna.gz}
|
output_format
string
|
Output format {gbk,gff}
|
|---|
faa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.faa.gz
file
|
protein translations file *.{faa.gz}
|
fna
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fna.gz
file
|
nucleotide sequences file *.{fna.gz}
|
score
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.score.gz
file
|
all potential genes (with scores) *.{score.gz}
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
annotations
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.${output_format}.gz
file
|
Gene annotations. The file format is specified via input channel "output_format". *.{gbk,gff}.gz
|
| Tool | Description | Homepage |
|---|---|---|
| pyrodigal | Pyrodigal is a Python module that provides bindings to Prodigal (ORF finder for microbial sequences) using Cython. | https://pyrodigal.readthedocs.org/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:39:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpyrodigal/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pyrodigal/blobs/sha256:e26d4ea3b80f9793aa32f8c6e6db12d37e6989487d687fc51978772b5ec76535 |
| Size | 3.3 KB |
| Checksum | sha256:e26d4ea3b80f9793aa32f8c6e6db12d37e6989487d687fc51978772b5ec76535 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:39:13 (UTC) | 3 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:03 (UTC) | 4 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:38 (UTC) | 4 | 3.3 KB |