Nextflow Modules
Showing module(s) with keyword "prediction"
| Module | Keywords | Description |
|---|---|---|
| nf-core/amplify/predict | antimicrobial peptides AMPs prediction model | AMPlify is an attentive deep learning model for antimicrobial peptide prediction. |
| nf-core/deeparg/downloaddata | download database deeparg antimicrobial resistance genes deep learning prediction | A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes |
| nf-core/deeparg/predict | deeparg antimicrobial resistance antimicrobial resistance genes arg deep learning prediction contigs metagenomes | A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes |
| nf-core/islandpath | genomes genomic islands prediction | Genomic island prediction in bacterial and archaeal genomes |
| nf-core/pyrodigal | sort annotation prediction prokaryote | Pyrodigal is a Python module that provides bindings to Prodigal, a fast, reliable protein-coding gene prediction for prokaryotic genomes. |
| nf-core/rpbp/selectfinalpredictionset | rpbp orf bayes prediction riboseq | Produce the final filtered set of predicted translated ORFs from the per-ORF Bayes factor table. Applies the standard Rp-Bp prediction rules: a minimum Bayes-factor cutoff (favouring translated over untranslated), a minimum ORF length, and overlap resolution so that among overlapping candidates only the highest-scoring representative is kept. Emits three files describing the same prediction set: a BED of ORF genomic coordinates plus score, a FASTA of ORF DNA sequences (extracted from the genome FASTA), and a FASTA of the corresponding translated protein sequences. This is the terminal step of the Rp-Bp per-sample chain. |
| nf-core/s4pred/runmodel | protein secondary structure prediction | Prediction of a protein's secondary structure from its amino acid sequence |
| nf-core/traitar/run | phenotype prediction microbial traits genomics protein families | Traitar3 - predict microbial phenotypes from genomic sequences using protein families |
| nf-core/tsebra | genomics transcript selector gene prediction evidence | Transcript Selector for BRAKER TSEBRA combines gene predictions by selecting transcripts based on their extrisic evidence support |