Nextflow Modules
Showing module(s) with keyword "prokaryote"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/biohansel | Process | Salmonella enterica subtyping prokaryote | Use k-mers to rapidly subtype S. enterica genomes |
| nf-core/gunc/downloaddb | Process | download prokaryote assembly genome quality control chimeras | Download database for GUNC detection of Chimerism and Contamination in Prokaryotic Genomes |
| nf-core/gunc/mergecheckm | Process | gunc checkm summary prokaryote assembly genome quality control chimeras | Merging of CheckM and GUNC results in one summary table |
| nf-core/gunc/run | Process | prokaryote assembly genome quality control chimeras | Detection of Chimerism and Contamination in Prokaryotic Genomes |
| nf-core/pyrodigal | Process | sort annotation prediction prokaryote | Pyrodigal is a Python module that provides bindings to Prodigal, a fast, reliable protein-coding gene prediction for prokaryotic genomes. |
| nf-core/scoary | Process | gwas pangenome prokaryote | Use pangenome outputs for GWAS |