nf-core/qualimap/rnaseq @ 0.0.0-0c7146d
Summary
Evaluate alignment data
Get started
Add the following snippet to your workflow script to include this module.
include { QUALIMAP_RNASEQ } from 'nf-core/qualimap/rnaseq'
License
MIT License
Process
Name
|
QUALIMAP_RNASEQ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.{bam}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
gtf
file
|
GTF file of the reference genome *.{gtf}
|
Output
2 channels
#1
results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Qualimap results dir */*
|
#2
versions_qualimap
tuple
${task.process}
string
|
The name of the process |
|---|---|
qualimap
string
|
The name of the tool |
qualimap 2>&1 | sed -n 's/.*QualiMap v.\(.*\)/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| qualimap | Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Interface and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. | http://qualimap.bioinfo.cipf.es/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:29:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fqualimap%2Frnaseq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/qualimap/rnaseq/blobs/sha256:bbda8164c133f227bed9a34c88f752da41abbd7046ffc9b793a64debecfae23b |
| Size | 2.7 KB |
| Checksum | sha256:bbda8164c133f227bed9a34c88f752da41abbd7046ffc9b793a64debecfae23b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:39:20 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:07 (UTC) | 5 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:49 (UTC) | 1 | 2.7 KB |