nf-core/racon @ 0.0.0-3fc6d40
Summary
Consensus module for raw de novo DNA assembly of long uncorrected reads
Get started
Add the following snippet to your workflow script to include this module.
include { RACON } from 'nf-core/racon'
License
MIT License
Process
Name
|
RACON |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files. Racon expects single end reads *.{fastq,fastq.gz,fq,fq.gz}
|
assembly
file
|
Genome assembly to be improved *.{fasta,fa}
|
paf
file
|
Alignment in PAF format *.paf
|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
improved_assembly
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_assembly_consensus.fasta.gz
file
|
Improved genome assembly *_assembly_consensus.fasta.gz
|
| Tool | Description | Homepage |
|---|---|---|
| racon | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. | https://github.com/lbcb-sci/racon |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:28:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fracon/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/racon/blobs/sha256:a3a5b045c9d84b23d6124f815555c12090a9ffb07c722d9ee8ce46a68f1d1ba4 |
| Size | 2.3 KB |
| Checksum | sha256:a3a5b045c9d84b23d6124f815555c12090a9ffb07c722d9ee8ce46a68f1d1ba4 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:39:29 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:15 (UTC) | 2 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:30:02 (UTC) | 2 | 2.2 KB |