nf-core/ribotricer/prepareorfs @ 0.0.0-3fc6d40
Summary
Accurate detection of short and long active ORFs using Ribo-seq data
Get started
Add the following snippet to your workflow script to include this module.
include { RIBOTRICER_PREPAREORFS } from 'nf-core/ribotricer/prepareorfs'
License
MIT License
Process
Name
|
RIBOTRICER_PREPAREORFS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
fasta
file
|
Fasta-format sequence file for reference sequences used in the bam file *.gtf
|
gtf
file
|
GTF-format annotation file for reference sequences used in the bam file *.gtf
|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
candidate_orfs
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
*_candidate_orfs.tsv
file
|
TSV file with candidate ORFs *.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| ribotricer | Python package to detect translating ORF from Ribo-seq data | https://github.com/smithlabcode/ribotricer |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:29:05 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fribotricer%2Fprepareorfs/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ribotricer/prepareorfs/blobs/sha256:c4a93d01c2204eda2b49a8a505492d6c5b49e665dfc00cbf6d84dfc0f25126a1 |
| Size | 2.5 KB |
| Checksum | sha256:c4a93d01c2204eda2b49a8a505492d6c5b49e665dfc00cbf6d84dfc0f25126a1 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:01 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:29:05 (UTC) | 2 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:47 (UTC) | 3 | 2.4 KB |