Nextflow Modules
Showing module(s) with keyword "riboseq"
| Module | Keywords | Description |
|---|---|---|
| nf-core/anota2seq/anota2seqrun | riboseq rnaseq translation differential | Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq |
| nf-core/plastid/make_wiggle | genomics riboseq psite wiggle bedgraph | Create wiggle or bedGraph files from alignment files after applying a read mapping rule (e.g. to map ribosome-protected footprints at their P-sites), for visualization in a genome browser |
| nf-core/plastid/metagene_generate | genomics riboseq psite | Compute a metagene profile of read alignments, counts, or quantitative data over one or more regions of interest, optionally applying a mapping rule |
| nf-core/plastid/psite | genomics riboseq psite | Estimate position of ribosomal P-site within ribosome profiling read alignments as a function of read length |
| nf-core/ribotish/predict | riboseq predict bam | Quality control of riboseq bam data |
| nf-core/ribotish/quality | riboseq quality bam | Quality control of riboseq bam data |
| nf-core/ribotricer/detectorfs | riboseq orf genomics | Accurate detection of short and long active ORFs using Ribo-seq data |
| nf-core/ribotricer/prepareorfs | riboseq orf genomics | Accurate detection of short and long active ORFs using Ribo-seq data |
| nf-core/ribowaltz | riboseq psite genomics | Calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data |