nf-core/rsem/preparereference @ 0.0.0-6c4ed3a
Summary
Prepare a reference genome for RSEM
Get started
Add the following snippet to your workflow script to include this module.
include { RSEM_PREPAREREFERENCE } from 'nf-core/rsem/preparereference'
License
MIT License
Process
Name
|
RSEM_PREPAREREFERENCE |
|---|
Input
2 channels
fasta
file
|
The Fasta file of the reference genome *.{fasta,fa}
|
|---|
gtf
file
|
The GTF file of the reference genome *.gtf
|
|---|
Output
4 channels
#1
index
rsem
directory
|
RSEM index directory rsem
|
|---|
#2
versions_rsem
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rsem
string
|
The tool name |
rsem-calculate-expression --version | sed -e "s/Current version: RSEM v//g"
eval
|
The expression to obtain the version of the tool |
#3
versions_star
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
star
string
|
The tool name |
STAR --version | sed -e "s/STAR_//g"
eval
|
The expression to obtain the version of the tool |
#4
transcript_fasta
*transcripts.fa
file
|
Fasta file of transcripts rsem/*transcripts.fa
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| rseqc | RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome | https://github.com/deweylab/RSEM |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frsem%2Fpreparereference/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rsem/preparereference/blobs/sha256:58d42eb7bf676d2f168c7bf1edf63324c9473641bf14b9f46bb5db77f2465327 |
| Size | 2.8 KB |
| Checksum | sha256:58d42eb7bf676d2f168c7bf1edf63324c9473641bf14b9f46bb5db77f2465327 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:10 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:02 (UTC) | 3 | 2.8 KB |