Nextflow Modules
Showing module(s) with keyword "rsem"
| Module | Keywords | Description |
|---|---|---|
| nf-core/custom/rsemmergecounts | rsem merge counts gene expression | Merge per-sample RSEM results into wide and long format TSV matrices |
| nf-core/custom/tx2gene | gene gtf pseudoalignment rsem transcript | Make a transcript/gene mapping from a GTF and cross-reference with transcript quantifications. |
| nf-core/rsem/calculateexpression | rsem expression quantification | Calculate expression with RSEM |
| nf-core/rsem/preparereference | rsem genome index | Prepare a reference genome for RSEM |
| nf-core/sentieon/rsemcalculateexpression | rsem expression quantification sentieon | Calculate expression with RSEM |
| nf-core/sentieon/rsempreparereference | rsem genome index sentieon | Prepare a reference genome for RSEM |
| nf-core/tximeta/tximport | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |
| nf-core/umitools/prepareforrsem | umitools rsem salmon dedup | Make the output from umi_tools dedup or group compatible with RSEM |