nf-core/rseqc/inferexperiment @ 0.0.0-6c4ed3a
Summary
Infer strandedness from sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { RSEQC_INFEREXPERIMENT } from 'nf-core/rseqc/inferexperiment'
License
MIT License
Process
Name
|
RSEQC_INFEREXPERIMENT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
the bam file to calculate statistics of *.{bam}
|
bai
file
|
BAM index file *.{bai}
|
bed
file
|
a bed file for the reference gene model *.{bed}
|
|---|
Output
2 channels
#1
txt
tuple
meta
file
|
infer_experiment results report *.infer_experiment.txt
|
|---|---|
*.infer_experiment.txt
file
|
infer_experiment results report *.infer_experiment.txt
|
#2
versions_rseqc
tuple
${task.process}
string
|
The name of the process |
|---|---|
rseqc
string
|
The name of the tool |
infer_experiment.py --version | sed "s/infer_experiment.py //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rseqc | RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. | http://rseqc.sourceforge.net/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frseqc%2Finferexperiment/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rseqc/inferexperiment/blobs/sha256:08580f1b16c82abd8c13c6b075136f4a0246448ef711b972ff129b7575b97b30 |
| Size | 2.6 KB |
| Checksum | sha256:08580f1b16c82abd8c13c6b075136f4a0246448ef711b972ff129b7575b97b30 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:13 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:05 (UTC) | 4 | 2.5 KB |