nf-core/rseqc/tin @ 0.0.0-6c4ed3a
Summary
Calculate TIN (transcript integrity number) from RNA-seq reads
Get started
Add the following snippet to your workflow script to include this module.
include { RSEQC_TIN } from 'nf-core/rseqc/tin'
License
MIT License
Process
Name
|
RSEQC_TIN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
Input BAM file *.{bam}
|
bai
file
|
Index for input BAM file *.{bai}
|
bed
file
|
BED file containing the reference gene model *.{bed}
|
|---|
Output
3 channels
#1
txt
tuple
meta
file
|
TXT file containing tin.py results summary *.txt
|
|---|---|
*.txt
file
|
TXT file containing tin.py results summary *.txt
|
#2
xls
tuple
meta
file
|
TXT file containing tin.py results summary *.txt
|
|---|---|
*.xls
file
|
XLS file containing tin.py results *.xls
|
#3
versions_rseqc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rseqc
string
|
The tool name |
tin.py --version | sed "s/tin.py //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rseqc | RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. | http://rseqc.sourceforge.net/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frseqc%2Ftin/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rseqc/tin/blobs/sha256:b7efd3f9f90c7feb525e5aad53de2254aa8f73347b3229dd6a841728e61e742a |
| Size | 2.6 KB |
| Checksum | sha256:b7efd3f9f90c7feb525e5aad53de2254aa8f73347b3229dd6a841728e61e742a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:22 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:19 (UTC) | 3 | 2.5 KB |