Nextflow Modules
Showing module(s) with keyword "transcript"
| Module | Keywords | Description |
|---|---|---|
| nf-core/custom/tx2gene | gene gtf pseudoalignment rsem transcript | Make a transcript/gene mapping from a GTF and cross-reference with transcript quantifications. |
| nf-core/evigene/tr2aacds | genomics transcript assembly clean polish filter redundant duplicate | Uses evigene/scripts/prot/tr2aacds.pl to filter a transcript assembly |
| nf-core/rseqc/tin | rnaseq transcript integrity | Calculate TIN (transcript integrity number) from RNA-seq reads |
| nf-core/stringtie/stringtie | transcript assembly quantification gtf | Transcript assembly and quantification for RNA-Se |
| nf-core/summarizedexperiment/summarizedexperiment | gene transcript sample matrix assay | SummarizedExperiment container |
| nf-core/transdecoder/longorf | eucaryotes gff transcript coding | TransDecoder identifies candidate coding regions within transcript sequences. it is used to build gff file. |
| nf-core/tsebra | genomics transcript selector gene prediction evidence | Transcript Selector for BRAKER TSEBRA combines gene predictions by selecting transcripts based on their extrisic evidence support |
| nf-core/tximeta/tximport | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |