nf-core/rtgtools/svdecompose @ 0.0.0-6c4ed3a
Summary
The svdecompose tool of RTG tools. It is used to decompose structural variants to BNDs
Get started
Add the following snippet to your workflow script to include this module.
include { RTGTOOLS_SVDECOMPOSE } from 'nf-core/rtgtools/svdecompose'
License
MIT License
Process
Name
|
RTGTOOLS_SVDECOMPOSE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
input
file
|
A VCF with called variants to decompose variants *.{vcf.gz}
|
tbi
file
|
The index of the VCF with called variants to decompose variants *.{vcf.gz.tbi}
|
Output
3 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
*.vcf.gz
file
|
A VCF file with SVTYPE BND variants *.vcf.gz
|
#2
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
*.vcf.gz.tbi
file
|
Index of VCF file with SVTYPE BND variants *.vcf.gz.tbi
|
#3
versions_rtgtools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rtgtools
string
|
The name of the tool |
rtg version | sed 's/Product: RTG Tools //; q'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rtgtools | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation | https://www.realtimegenomics.com/products/rtg-tools |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:31 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frtgtools%2Fsvdecompose/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rtgtools/svdecompose/blobs/sha256:a250b327040c9f23b81aef8811e9a9c785fb5172cdf704765fc8883d795e57ba |
| Size | 2.6 KB |
| Checksum | sha256:a250b327040c9f23b81aef8811e9a9c785fb5172cdf704765fc8883d795e57ba |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:31 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:29 (UTC) | 3 | 2.6 KB |