Nextflow Modules
Showing module(s) with keyword "structural"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/delly/call | Process | genome structural variants bcf | Call structural variants |
| nf-core/delly/sr | Process | genome structural variants bcf | Integrated structural variant (SV) prediction method |
| nf-core/kled | Process | genomics longread structural variants | An ultra-fast and sensitive structural variant detection tool for long-read sequencing data. |
| nf-core/octopusv/correct | Process | structural variant sv svcf normalize | Standardize a caller VCF into OctopuSV SVCF format. |
| nf-core/octopusv/filter | Process | structural variant sv svcf filter | Filter SVCF based on specified criteria |
| nf-core/octopusv/subset | Process | structural variant sv svcf subset | Subset an OctopuSV SVCF by sample and/or caller. |
| nf-core/pbsv/discover | Process | variant pacbio structural | pbsv - PacBio structural variant (SV) signature discovery tool |
| nf-core/rtgtools/svdecompose | Process | svdecompose structural vcf rtg-tools | The svdecompose tool of RTG tools. It is used to decompose structural variants to BNDs |
| nf-core/severus | Process | structural variation somatic germline long-read | Severus is a somatic structural variation (SV) caller for long reads (both PacBio and ONT) |
| nf-core/svtools/vcftobedpe | Process | structural bedpe vcf conversion variants | Convert a VCF file to a BEDPE file. |
| nf-core/tiddit/sv | Process | structural variants vcf | Identify chromosomal rearrangements. |