nf-core/s4pred/runmodel @ 0.0.0-6c4ed3a
Summary
Prediction of a protein's secondary structure from its amino acid sequence
Get started
Add the following snippet to your workflow script to include this module.
include { S4PRED_RUNMODEL } from 'nf-core/s4pred/runmodel'
License
MIT License
Process
Name
|
S4PRED_RUNMODEL |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
protein FASTA file containing one or more amino acid sequences to predict their respective secondary structures *.{fasta,fa,fas,fna,faa}
|
Output
2 channels
#1
preds
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
A folder with all the prediction outputs ${prefix}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| s4pred | Accurate prediction of a protein's secondary structure from its amino acid sequence | https://github.com/psipred/s4pred |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fs4pred%2Frunmodel/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/s4pred/runmodel/blobs/sha256:02ccc21c4c534decc28504e2840827c426220f1995f6a61164716e9c6bb3e601 |
| Size | 2.7 KB |
| Checksum | sha256:02ccc21c4c534decc28504e2840827c426220f1995f6a61164716e9c6bb3e601 |
| Downloads | 5 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:42 (UTC) | 5 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:29:18 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:45 (UTC) | 3 | 2.6 KB |