nf-core/sambamba/flagstat @ 0.0.0-6c4ed3a
Summary
Outputs some statistics drawn from read flags.
Get started
Add the following snippet to your workflow script to include this module.
include { SAMBAMBA_FLAGSTAT } from 'nf-core/sambamba/flagstat'
License
MIT License
Process
Name
|
SAMBAMBA_FLAGSTAT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.{bam}
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.stats
file
|
Stats file *.{stats}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| sambamba | Tools for working with SAM/BAM data | https://lomereiter.github.io/sambamba/docs/sambamba-view.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsambamba%2Fflagstat/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sambamba/flagstat/blobs/sha256:407cdfbf4cf8e6a31bc8b4e58537c642c52134d77dcfede0419ddfc103fed05e |
| Size | 2.0 KB |
| Checksum | sha256:407cdfbf4cf8e6a31bc8b4e58537c642c52134d77dcfede0419ddfc103fed05e |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:54 (UTC) | 4 | 2.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:29:26 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:33:04 (UTC) | 2 | 2.0 KB |