nf-core/seqcluster/collapse @ 0.0.0-3fc6d40
Summary
Seqcluster collapse reduces computational complexity by collapsing identical sequences in a FASTQ file.
Get started
Add the following snippet to your workflow script to include this module.
include { SEQCLUSTER_COLLAPSE } from 'nf-core/seqcluster/collapse'
License
MIT License
Process
Name
|
SEQCLUSTER_COLLAPSE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastq
file
|
FASTQ file *.{fastq.gz}
|
Output
2 channels
#1
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.fastq.gz
file
|
FASTQ file *.{fastq.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| seqcluster | Small RNA analysis from NGS data. Seqcluster generates a list of clusters of small RNA sequences, their genome location, their annotation and the abundance in all the sample of the project. | https://github.com/lpantano/seqcluster |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:30:12 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqcluster%2Fcollapse/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqcluster/collapse/blobs/sha256:ab6bc528874dfa6563b6cdb1a2a136d64f89ca7deafbeca4b4abf4f7ccfdfb8d |
| Size | 2.5 KB |
| Checksum | sha256:ab6bc528874dfa6563b6cdb1a2a136d64f89ca7deafbeca4b4abf4f7ccfdfb8d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:18 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:12 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:20 (UTC) | 2 | 2.5 KB |