nf-core/seqkit/stats @ 0.0.0-6c4ed3a
Summary
simple statistics of FASTA/Q files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_STATS } from 'nf-core/seqkit/stats'
License
MIT License
Process
Name
|
SEQKIT_STATS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
Either FASTA or FASTQ files. *.{fa,fna,faa,fasta,fq,fastq}[.gz]
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Tab-separated output file with basic sequence statistics. *.tsv
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of seqkit |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen. | https://bioinf.shenwei.me/seqkit/usage/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:44:39 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fstats/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/stats/blobs/sha256:268d7a784853a8b5724350bfd4fce0675ef1d59c397262e7e5be842bc4a7e237 |
| Size | 2.5 KB |
| Checksum | sha256:268d7a784853a8b5724350bfd4fce0675ef1d59c397262e7e5be842bc4a7e237 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:39 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:33 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:52 (UTC) | 4 | 2.5 KB |