Nextflow Modules
Showing module(s) with keyword "seqkit"
| Module | Keywords | Description |
|---|---|---|
| nf-core/seqkit/grep | filter seqkit subseq grep | Select sequences from a large file based on name/ID |
| nf-core/seqkit/head | filter subset reads fasta fastq seqkit | Subset FASTA/FASTQ files to some number of sequences |
| nf-core/seqkit/pair | seqkit pair fastq | match up paired-end reads from two fastq files |
| nf-core/seqkit/replace | seqkit replace sequence sequence headers fasta | Use seqkit to find/replace strings within sequences and sequence headers |
| nf-core/seqkit/sample | genomics fasta fastq sample subset seqkit | Sample sequences from FASTA/FASTQ files by number or proportion |
| nf-core/seqkit/sliding | seqkit sliding windows | Use seqkit to generate sliding windows of input fasta |
| nf-core/seqkit/split2 | split fastq seqkit | Split single or paired-end fastq.gz files |
| nf-core/seqkit/stats | seqkit fasta stats | simple statistics of FASTA/Q files |
| nf-core/seqkit/translate | seqkit translate protein | Translate DNA/RNA to protein sequence |