nf-core/seqkit/translate @ 0.0.0-3fc6d40
Summary
Translate DNA/RNA to protein sequence
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_TRANSLATE } from 'nf-core/seqkit/translate'
License
MIT License
Process
Name
|
SEQKIT_TRANSLATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastx
file
|
Input fasta/fastq file *.{fna,fsa,fas,fa,fasta,fastq,fq}[.gz]
|
Output
2 channels
#1
fastx
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.*
file
|
Translated fasta/fastq file *.{fna,fsa,fas,fa,fasta,fastq,fq}[.gz]
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://bioinf.shenwei.me/seqkit/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:30:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Ftranslate/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/translate/blobs/sha256:83606ef90845deb656a3069c0ab615ee8011c4ce266ae1884765d8abfafc63be |
| Size | 2.8 KB |
| Checksum | sha256:83606ef90845deb656a3069c0ab615ee8011c4ce266ae1884765d8abfafc63be |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:42 (UTC) | 2 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:35 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:56 (UTC) | 2 | 2.8 KB |