nf-core/seqtk/mergepe @ 0.0.0-3fc6d40
Summary
Interleave pair-end reads from FastQ files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQTK_MERGEPE } from 'nf-core/seqtk/mergepe'
License
MIT License
Process
Name
|
SEQTK_MERGEPE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively. *.{fastq.gz}
|
Output
2 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
If single-end reads, the output is the same as the input, 1 FastQ file for each read. If pair-end reads, the read pairs will be interleaved and output as 1 FastQ file for each read pair. *.{fastq.gz}
|
#2
versions_seqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqtk
string
|
The name of the tool |
seqtk 2>&1 | sed -n 's/^Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqtk | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file. | https://github.com/lh3/seqtk |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:30:40 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqtk%2Fmergepe/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqtk/mergepe/blobs/sha256:01e98b7a4067411cdb7fde876aeec11d66015307b97d121870dc88a2e358b0bc |
| Size | 2.6 KB |
| Checksum | sha256:01e98b7a4067411cdb7fde876aeec11d66015307b97d121870dc88a2e358b0bc |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:46 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:40 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:37:04 (UTC) | 3 | 2.5 KB |