nf-core/seqtk/subseq @ 0.0.0-0c7146d
Summary
Select only sequences that match the filtering condition
Get started
Add the following snippet to your workflow script to include this module.
include { SEQTK_SUBSEQ } from 'nf-core/seqtk/subseq'
License
MIT License
Process
Name
|
SEQTK_SUBSEQ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
sequences
file
|
FASTQ/FASTA file *.{fq,fq.gz,fa,fa.gz}
|
filter_list
file
|
BED file or a text file with a list of sequence names *.{bed,lst}
|
|---|
Output
2 channels
#1
sequences
tuple
meta
file
|
FASTQ/FASTA file *.{fq.gz,fa.gz}
|
|---|---|
*.gz
file
|
FASTQ/FASTA file *.{fq.gz,fa.gz}
|
#2
versions_seqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqtk
string
|
The name of the tool |
seqtk 2>&1 | sed -n 's/^Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqtk | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | https://github.com/lh3/seqtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:37:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqtk%2Fsubseq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqtk/subseq/blobs/sha256:2b5b1e9b3b6d7b4de3478a3e884e216e66aba863f358755ebe06a3c2093b3d5e |
| Size | 2.4 KB |
| Checksum | sha256:2b5b1e9b3b6d7b4de3478a3e884e216e66aba863f358755ebe06a3c2093b3d5e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:51 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:45 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:37:11 (UTC) | 3 | 2.4 KB |