nf-core/sequali @ 0.0.0-6c4ed3a
Summary
Sequence quality metrics for FASTQ and uBAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { SEQUALI } from 'nf-core/sequali'
License
MIT License
Process
Name
|
SEQUALI |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
Input FASTQ(s) or uBAM file. The format is autodetected and compressed formats are supported. *.{fastq,fq,fastq.gz,fq.gz,bam}
|
Output
3 channels
#1
html
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.html
file
|
HTML output file. *.{html}
|
#2
json
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.json
file
|
JSON output file. *.{json}
|
#3
versions_sequali
tuple
${task.process}
string
|
The name of the process |
|---|---|
sequali
string
|
The name of the tool |
sequali --version |& sed '1!d ; s/sequali //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sequali | Fast sequencing quality metrics | https://github.com/rhpvorderman/sequali |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:44:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsequali/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sequali/blobs/sha256:d4835a308549c95e9fa27578fb2df9a55482e85feb0be64eb21fc9362d02b91c |
| Size | 2.9 KB |
| Checksum | sha256:d4835a308549c95e9fa27578fb2df9a55482e85feb0be64eb21fc9362d02b91c |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:54 (UTC) | 4 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:48 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:37:14 (UTC) | 4 | 2.8 KB |