Nextflow Modules
Showing module(s) with keyword "preprocessing"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bbmap/repair | paired reads re-pairing fastq preprocessing | Re-pairs reads that became disordered or had some mates eliminated. |
| nf-core/gens/preparecovandbaf | gens preparecovandbaf preprocessing genomics CNV | Tools for preparing inputs for visualization in Gens |
| nf-core/leehom | ancient DNA adapter removal clipping trimming merging collapsing preprocessing bayesian | Bayesian reconstruction of ancient DNA fragments |
| nf-core/pharmcat/vcfpreprocessor | preprocessing vcf phamrcat | The PharmCAT VCF Preprocessor is a script that can pre-process VCF files for PharmCAT to make sure the VCF file complies with PharmCAT's VCF Requirements |
| nf-core/scanpy/filter | filter quality-control scanpy single-cell preprocessing | Filter cells and genes in single-cell RNA-seq data using Scanpy |
| nf-core/sequali | quality_control qc preprocessing | Sequence quality metrics for FASTQ and uBAM files. |
| nf-core/varlociraptor/preprocess | observations variants preprocessing | Obtains per-sample observations for the actual calling process with varlociraptor calls |