Nextflow Registry | nf-core/ska/fasta@0.0.0-0c7146d

nf-core/ska/fasta @ 0.0.0-0c7146d

Create genome sketch using split k-mers

genomics metagenomics kmer split_kmers sketch

Latest version: 0.0.0-6c4ed3a

Total downloads: 8

Source: nf-core/modules

Authors: @itrujnara

Maintainers: @itrujnara

Create genome sketch using split k-mers

Add the following snippet to your workflow script to include this module.

include { SKA_FASTA } from 'nf-core/ska/fasta'

MIT License

Process

`Name`	`SKA_FASTA`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fastas` file	FASTA files with contigs/reads `*.fa(sta)`
`fasta_list` file	List of FASTA files with contigs/reads `*.txt`

Output 2 channels

#1 skf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`*.skf` file	File containing genome sketch `*.skf`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
ska	SKA (Split Kmer Analysis)	https://github.com/simonrharris/SKA

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:38:08 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fska%2Ffasta/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ska/fasta/blobs/sha256:402939d8c89ebc975a69704eca1eba8f8dba588f9b62d9d264eca19aae94a574
Size	2.2 KB
Checksum	sha256:402939d8c89ebc975a69704eca1eba8f8dba588f9b62d9d264eca19aae94a574
Downloads	2

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:46:17 (UTC)	3	2.2 KB
0.0.0-3fc6d40	22 Apr 2026 15:31:56 (UTC)	3	2.2 KB
0.0.0-0c7146d	08 Apr 2026 19:38:08 (UTC)	2	2.2 KB